Based on the settings of your F-Secure security product, it will either move the file to the quarantine where it cannot spread or cause harm, or remove it.
Visitors to these sites may then be subjected to the payload of the obfuscated script, which can range from redirecting to the user to an unsolicited and/or malicious site to silent download and execution of files onto the user's machine.
When delivered via malicious advetisements (typically provided by third-party marketing services in good faith, and displayed on legitimate websites), this is a form of malvertising.
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